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You are watching: Which enzyme is responsible for facilitating the hydrogen bonding between nucleotides

Griffiths AJF, Gelbart WM, müller JH, et al. Modern Genetic Analysis. New York: W. H. Freeman; 1999.

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In both prokaryotes and eukaryotes, DNA replication occurs together a prelude to cell division. ThisDNA replication step is dubbed the S (synthesis) phase. The 2 daughter DNAmolecules formed from replication eventually become chromosomes in their very own right in thedaughter cells.

As with all phenomena that involve main point acids, the basic machinery the DNA replicationdepends top top complementarity the DNA molecules and also on the capacity of proteins to type specificinteractions through DNA of particular sequences.

Semiconservative Replication

Figure 4-1 diagrams the system for DNA replicationin prokaryotes and eukaryotes. Imagine that the double helix is favor a zipper that unzips,starting at one finish (the bottom in this figure). We deserve to see the the unwinding that the twostrands exposes single bases on each strand, and also each exposed base has actually the potential come pairwith cost-free nucleotides in solution. (These newly added nucleotides come native a pool that hasbeen chemically synthesized in the cytoplasm.) because base-pairing rules room strict, eachexposed base deserve to pair only with its safety base. Therefore base complementarity,each the the two solitary strands acts together a template(an alignment guide) to re-form a twin helix the same with the original. This type ofreplication is termed semiconservative since each daughter dual helix containsone parental and also one freshly synthesized strand. If DNA molecule are permitted to replicate innucleotides include rare isotopes (which act together tags), it have the right to be presented experimentally thatthe daughter molecules contain one strand v the typical isotope and one strand through the rareform (see genetics in process 4-1).


Figure 4-1

The design of DNA replication proposed by Watson and also Crick is based on the hydrogen-bondingspecificity of the base pairs. Complementary strands are shown in different colors.


The Polymerization Process

First, let’s check out a general overview that the polymerization events arising during thereplication process. The enzyme the catalyzes the polymerization of nucleotides is DNA polymerase. This enzyme functions by addingdeoxyribonucleotides to the 3′ end of a farming nucleotide chain, using a single-stranded DNAtemplate (Figure 4-2). Recall from chapter 3 that RNA polymerase acts in a comparable way,adding ribonucleotides come a 3′-growing RNA molecule. The substrates because that DNA polymerase are thetriphosphate forms of the deoxynucleotides dATP, dGTP, dCTP, and dTTP. DNA polymerase acts atthe replication fork, the zone wherein the DNA isunwinding and also exposing single strands come act together templates. Because the nucleotidepolymerization catalyzed by DNA polymerase is always at the 3′ cultivation tip, new synthesis canoccur in a smooth, continuous manner ~ above one layout only; this new strand is referred to as the top strand (Figure4-3). Synthetic on the various other template additionally takes place at 3′ growing tips yet in shortstretches to run the “wrong way” (since for this strand, the 5′ → 3′ direction is far fromthe replication fork). In essence, for this strand DNA polymerase runs the end of exposed templateand has to wait until the replication fork exposes much more DNA prior to it can synthesize anothershort stretch that DNA. These quick stretches, dubbed Okazaki fragments, room laterjoined with each other by an enzyme called DNA ligase. The brand-new strand thus developed iscalled the lagging strand.


Figure 4-2

A DNA replication fork mirroring in simplified form how nucleotides are added to the 3′growing tips on each template, but in opposite directions. See figure 4-3 for much more details and subsequent steps.


Figure 4-3

Many active proteins are required to lug out the general replication procedure just described.The connecting components that replication in the bacterium Escherichia coliare shown in number 4-4 ~ above the following page. The mainpolymerase is DNA polymerase III (pol III), i beg your pardon catalyzes 3′ nucleotide addition at thereplication fork. However, polymerases that this form need to add nucleotides to an alreadyexisting nucleotide chain. Thus at the start of replication ~ above both the top andthe lagging strands, brief stretches that RNA room synthesized to act aspolymerization starters or primers. on the top strand, just one initial primeris needed due to the fact that after the early stage priming, consistent addition have the right to use the growing DNA strandas the primer. However, on the lagging strand every Okazaki fragment requirements its very own primer. Theprimers room synthesized by a collection of proteins called a primosome, of which acentral ingredient is an enzyme primase, a form ofRNA polymerase. Remove of the RNA primers and also filling in of the gaps left by their removalwith DNA is carry out by a various DNA polymerase, pol I. After pol I has actually done that is job,ligase join the 3′ end of the gap-filling DNA to the 5′ finish of the downstream Okazakifragment.

Figure 4-4

The motion of the replication fork is accomplished by the enzyme helicase, which breaks hydrogen bonds between the combine bases and unwindsthe double helix ahead of the progressing DNA polymerase. The solitary strands that DNA for this reason createdare prevented from rejoining by single-strand binding proteins. Together the DNA is unwound, it tendsto come to be supercoiled, a process similar come the one us observe once trying to pull apart twostrands of a piece of wire or rope. The twin helix is returned to its peaceful state by theaction of one more enzyme, gyrase, i m sorry is a form of topoisomerase. This class of enzymes deserve to cut and rejoin DNA strands,allowing them come “pass through” each other, looking like a magician interlocking and also separatingsteel rings.

Origins the Replication

In the genomes that prokaryotes and eukaryotes, replication starts from particular nucleotidesequences well-known by the replication apparatus; these are referred to as origins ofreplication. Synthesis then proceeds bidirectionally, with two forksmoving external in opposite directions, as shown in Figure4-5a. The replicated dual helices that room being developed by each beginning of replication elongate and eventually join each other. When replication that the 2 strands iscomplete, two the same daughter molecules that DNA result. In the eukaryoticchromosome this replicas are referred to as sister chromatids (Figure 4-5b). Keep in mind that the hatchet chromatid is applied onlytemporarily. Chromatids room in fact bona fide chromosomes, and they reassume this identityafter cabinet division.


DNA replicates semiconservatively. V separated single strands that the twin helixas templates, nucleotides room polymerized at the 3ends of brand-new chains.Addition proceeds consistently in the leading strand but occurs in brief bursts in thelagging strand.

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Figure 4-5

(a) The bidirectional nature the DNA replication. Beginning at the origin, DNA polymerasesmove external in both directions. Lengthy arrows present leading strands and short join arrowsshow lagging strands. (b) how replication proceeds at the chromosome level. (more...)

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